DNA-Seq of Hepatovirus A - SRA

SRX4318442: DNA-Seq of Hepatovirus A
1 ILLUMINA (Illumina MiSeq) run: 2.5M spots, 1.5G bases, 672.6Mb downloads

Design: KAPA Hyper Prep Kit (24rxn) (cat# 07962347001, Roche)

Submitted by: University of Barcelona (UB)

Study: Deep-sequencing characterization of an outbreak of hepatitis A in the men-having-sex-with men group: evidence for positive selection of antigenic variants in vaccinated patients and implications for vaccination policy

PRJNA478337 • SRP151545 • All experiments • All runs

show Abstracthide Abstract

Perform deep-sequencing analysis of ten overlapping fragments covering the complete capsid coding region of HAV. Evolution at the quasispecies level, in non-vaccinated and vaccinated patients, revealed significantly higher diversity in epitope-coding regions of the vaccinated group.

Sample:

SAMN09514206 • SRS3481021 • All experiments • All runs

Organism: Hepatovirus A

Library:

Name: M7

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: VIRAL RNA

Selection: PCR

Layout: SINGLE

Runs: 1 run, 2.5M spots, 1.5G bases, 672.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR7447896	2,539,278	1.5G	672.6Mb	2019-05-31

ID:: 5805827

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity